PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00241.1.g00210.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 367aa    MW: 39595.2 Da    PI: 11.125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00241.1.g00210.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20156205255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Zpz_sc00241.1.g00210.1.sm.mkhc 156 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 205
                                     7********.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-33155214IPR001471AP2/ERF domain
PfamPF008471.8E-13156205IPR001471AP2/ERF domain
PROSITE profilePS5103224.711156213IPR001471AP2/ERF domain
CDDcd000181.06E-29156214No hitNo description
SMARTSM003804.8E-38156219IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-22156214IPR016177DNA-binding domain
PRINTSPR003671.7E-11157168IPR001471AP2/ERF domain
PRINTSPR003671.7E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPGDRRIDPS RSSSDGRKAR SIGSRIKWIP AGSMGNDLYP PTKRKKSHRR RQRPSKSKRR  60
RPNTKTFSGG GSSSSVAPRG ASPSPEAYAQ YYYSARADQD ASAVASALAH VIRASPDKIN  120
PPQGFVYPGP SAPAPEQQHP GHAAAAVEEE QERRRHYRGV RQRPWGKWAA EIRDPKKAAR  180
VWLGTFDTAE DAAIAYDEAA LRFKGTKAKL NFPERVQGRT DLGFLVTRGI PDRRGHTSPA  240
AGVTLAMPPP HQHYQHTVVP YPDVMQYAQL RQGGGRGDAH QQFMMMGANT RGGVNLPFGA  300
AVSPSSSARQ ILDFSTQQLI RQRPPSPAAA LSSSGAGAPS TASSAITASS PSSSAWPYGG  360
EQKDKDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-26155217467ATERF1
3gcc_A2e-26155217467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247KRKKSH
24360RKKSHRRRQRPSKSKRRR
34361RKKSHRRRQRPSKSKRRRP
44461KKSHRRRQRPSKSKRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-104EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702791.13e-97PREDICTED: AT-rich interactive domain-containing protein 1A-like isoform X3
TrEMBLW5BS872e-99W5BS87_WHEAT; Uncharacterized protein
TrEMBLK7TNZ61e-98K7TNZ6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G425798_P023e-98(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-30ERF family protein